Patterns of coordination result from the interaction between (at least) two oscillatory components. This interaction is typically understood by means of two variables: the mode that expresses the shape of the interaction, and the stability that is the robustness of the interaction in this mode. A potent method of investigating coordinated behaviors is to examine the extent to which patterns of coordination arise spontaneously. However, a prominent issue faced by researchers is that, to date, no standard methods exist to fairly assess the stability of spontaneous coordination. In the present study, we introduce a new method called the index-of-stability (IS) analysis. We developed this method from the phase-coupling (PC) analysis that has been traditionally used for examining locomotion–respiration coordinated systems. We compared the extents to which both methods estimate the stability of simulated coordinated behaviors. Computer-generated time series were used to simulate the coordination of two rhythmic components according to a selected mode m:n and a selected degree of stability. The IS analysis was superior to the PC analysis in estimating the stability of spontaneous coordinated behaviors, in three ways: First, the estimation of stability itself was found to be more accurate and more reliable with the IS analysis. Second, the IS analysis is not constrained by the limitations of the PC analysis. Third and last, the IS analysis offers more flexibility, and so can be adapted according to the user’s needs.