CerebralWeb: A cytoscape.js plug-in to visualize networks stratified by subcellular localization

Silvia Frias, Kenneth Bryan, Fiona Brinkman, David Lynn

    Research output: Contribution to journalArticle

    5 Citations (Scopus)

    Abstract

    CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb. com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources.

    Original languageEnglish
    Article numberbav041
    Number of pages4
    JournalDatabase: The Journal of Biological Databases and curation
    Volume2015
    Issue numberArt: bav041
    DOIs
    Publication statusPublished - 2015

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