Circular RNAs of UDP-Glycosyltransferase (UGT) genes expand the complexity and diversity of the UGT transcriptome

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Abstract

The human UDP-glycosyltransferase (UGT) gene superfamily generates 22 canonical transcripts coding for functional enzymes, but also produces nearly 150 variant UGT transcripts through alternative splicing and intergenic splicing. In the present study, our analysis of circRNA databases identified backsplicing events that predicted 85 circRNAs from UGT genes, with 33, 11, and 19 circRNAs from UGT1A, UGT2B4, UGT8, respectively. Most of these UGT circRNAs were reported by one database and had low abundance in cell-/tissue-specific contexts. Using RT-PCR with divergent primers and cDNA samples from human tissues and cell lines, we found 13 circRNAs from four UGT genes: UGT1A (3), UGT2B7 (1), UGT2B10 (1), and UGT8 (8). Notably, all eight UGT8 circRNAs contain open reading frames that include the canonical start AUG codon and encode variant proteins that all have the common 274-aa N-terminal region of wildtype UGT8 protein. We further showed that one UGT8 circRNA (circ_UGT8-1) was broadly expressed in human tissues and cell lines, resistant to RNase R digestion, and predominately present in the cytoplasm. We cloned five UGT8 circRNAs into the ZKSCAN1 vector, and transfected them into HEK293T cells. All these vectors produced both circRNAs and linear transcripts with varying circular/linear ratios (0.17-1.14). Western blotting and mass spectrometry assays revealed only linear transcripts and not circRNAs were translated. In conclusion, our findings of nearly 100 circRNAs greatly expand the complexity and diversity of the UGT transcriptome; however, UGT circRNAs are expressed at very low level in specific cellular contexts, and their biological functions remain to be determined.
Original languageEnglish
Article number000225
JournalMolecular Pharmacology
DOIs
Publication statusPublished - Apr 2021

Keywords

  • glucuronidation
  • UDP-glucuronyltransferases
  • UGT transcriptomics
  • protein synthesis

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