Integration of genomic and proteomic analyses in the classification of the Siphoviridae family

Evelien M. Adriaenssens; Rob Edwards; John H.E. Nash; Padmanabhan Mahadevan; Donald Seto; Hans Wolfgang Ackermann; Rob Lavigne; Andrew M. Kropinski

doi:10.1016/j.virol.2014.10.016

Integration of genomic and proteomic analyses in the classification of the Siphoviridae family

Evelien M. Adriaenssens
, Rob Edwards
, John H.E. Nash
, Padmanabhan Mahadevan
, Donald Seto
, Hans Wolfgang Ackermann
, Rob Lavigne
, Andrew M. Kropinski

Research output: Contribution to journal › Article › peer-review

46 Citations (Scopus)

Abstract

Using a variety of genomic (BLASTN, ClustalW) and proteomic (Phage Proteomic Tree, CoreGenes) tools we have tackled the taxonomic status of members of the largest bacteriophage family, the Siphoviridae. In all over 400 phages were examined and we were able to propose 39 new genera, comprising 216 phage species, and add 62 species to two previously defined genera (. Phic3unalikevirus; L5likevirus) grouping, in total, 390 fully sequenced phage isolates. Many of the remainders are orphans which the Bacterial and Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) chooses not to ascribe genus status at the time being.

Original language	English
Pages (from-to)	144-154
Number of pages	11
Journal	Virology
Volume	477
DOIs	https://doi.org/10.1016/j.virol.2014.10.016
Publication status	Published - Mar 2015
Externally published	Yes

Keywords

ClustalW
CoreGenes
ICTV
Phage Proteomic Tree
Siphoviridae
Taxonomy

Access to Document

10.1016/j.virol.2014.10.016Licence: In Copyright

Cite this

@article{e400f4a9e71a4c32b98b2b2d954cf497,

title = "Integration of genomic and proteomic analyses in the classification of the Siphoviridae family",

abstract = "Using a variety of genomic (BLASTN, ClustalW) and proteomic (Phage Proteomic Tree, CoreGenes) tools we have tackled the taxonomic status of members of the largest bacteriophage family, the Siphoviridae. In all over 400 phages were examined and we were able to propose 39 new genera, comprising 216 phage species, and add 62 species to two previously defined genera (. Phic3unalikevirus; L5likevirus) grouping, in total, 390 fully sequenced phage isolates. Many of the remainders are orphans which the Bacterial and Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) chooses not to ascribe genus status at the time being.",

keywords = "ClustalW, CoreGenes, ICTV, Phage Proteomic Tree, Siphoviridae, Taxonomy",

author = "Adriaenssens, \{Evelien M.\} and Rob Edwards and Nash, \{John H.E.\} and Padmanabhan Mahadevan and Donald Seto and Ackermann, \{Hans Wolfgang\} and Rob Lavigne and Kropinski, \{Andrew M.\}",

year = "2015",

month = mar,

doi = "10.1016/j.virol.2014.10.016",

language = "English",

volume = "477",

pages = "144--154",

journal = "Virology",

issn = "0042-6822",

publisher = "Academic Press Inc.",

}

TY - JOUR

T1 - Integration of genomic and proteomic analyses in the classification of the Siphoviridae family

AU - Adriaenssens, Evelien M.

AU - Edwards, Rob

AU - Nash, John H.E.

AU - Mahadevan, Padmanabhan

AU - Seto, Donald

AU - Ackermann, Hans Wolfgang

AU - Lavigne, Rob

AU - Kropinski, Andrew M.

PY - 2015/3

Y1 - 2015/3

N2 - Using a variety of genomic (BLASTN, ClustalW) and proteomic (Phage Proteomic Tree, CoreGenes) tools we have tackled the taxonomic status of members of the largest bacteriophage family, the Siphoviridae. In all over 400 phages were examined and we were able to propose 39 new genera, comprising 216 phage species, and add 62 species to two previously defined genera (. Phic3unalikevirus; L5likevirus) grouping, in total, 390 fully sequenced phage isolates. Many of the remainders are orphans which the Bacterial and Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) chooses not to ascribe genus status at the time being.

AB - Using a variety of genomic (BLASTN, ClustalW) and proteomic (Phage Proteomic Tree, CoreGenes) tools we have tackled the taxonomic status of members of the largest bacteriophage family, the Siphoviridae. In all over 400 phages were examined and we were able to propose 39 new genera, comprising 216 phage species, and add 62 species to two previously defined genera (. Phic3unalikevirus; L5likevirus) grouping, in total, 390 fully sequenced phage isolates. Many of the remainders are orphans which the Bacterial and Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) chooses not to ascribe genus status at the time being.

KW - ClustalW

KW - CoreGenes

KW - ICTV

KW - Phage Proteomic Tree

KW - Siphoviridae

KW - Taxonomy

UR - https://www.scopus.com/pages/publications/84929999962

U2 - 10.1016/j.virol.2014.10.016

DO - 10.1016/j.virol.2014.10.016

M3 - Article

C2 - 25466308

AN - SCOPUS:84929999962

SN - 0042-6822

VL - 477

SP - 144

EP - 154

JO - Virology

JF - Virology

ER -

Integration of genomic and proteomic analyses in the classification of the Siphoviridae family

Abstract

Keywords

Access to Document

Other files and links

Fingerprint

Cite this