linsalrob/atavide: RPKMS

Rob Edwards

doi:10.5281/zenodo.5854988

linsalrob/atavide: RPKMS

Rob Edwards (Developer)

College of Science and Engineering

Research output: Non-textual form › Software

Abstract

This release introduces rpkm calculations and makes some summary tables based on the kraken output.

I also added a requirements.txt file, and you should pip install that as sometimes pysam can't be found and that breaks things.

Original language	English
Publisher	Zenodo
Edition	Version 0.4
Media of output	Online
Size	51.3 kB
DOIs	https://doi.org/10.5281/zenodo.5854988
Publication status	Published - 15 Jan 2022

Keywords

linsalrob
microbiology
online software

Access to Document

10.5281/zenodo.5854988Licence: CC BY

Cite this

@misc{c1e1cad496ff499a938185e8c9b47250,

title = "linsalrob/atavide: RPKMS",

abstract = "This release introduces rpkm calculations and makes some summary tables based on the kraken output.I also added a requirements.txt file, and you should pip install that as sometimes pysam can't be found and that breaks things.",

keywords = "linsalrob, microbiology, online software",

author = "Rob Edwards",

year = "2022",

month = jan,

day = "15",

doi = "10.5281/zenodo.5854988",

language = "English",

publisher = "Zenodo",

edition = "Version 0.4",

}

TY - ADVS

T1 - linsalrob/atavide

T2 - RPKMS

A2 - Edwards, Rob

PY - 2022/1/15

Y1 - 2022/1/15

N2 - This release introduces rpkm calculations and makes some summary tables based on the kraken output.I also added a requirements.txt file, and you should pip install that as sometimes pysam can't be found and that breaks things.

AB - This release introduces rpkm calculations and makes some summary tables based on the kraken output.I also added a requirements.txt file, and you should pip install that as sometimes pysam can't be found and that breaks things.

KW - linsalrob

KW - microbiology

KW - online software

U2 - 10.5281/zenodo.5854988

DO - 10.5281/zenodo.5854988

M3 - Software

PB - Zenodo

ER -