metagentools/GraphBin2:: GraphBin2 v1.2.1

Vijini Mallawaarachchi

doi:10.5281/zenodo.8274998

metagentools/GraphBin2: GraphBin2 v1.2.1

Vijini Mallawaarachchi (Developer)

College of Science and Engineering

Research output: Non-textual form › Software

Abstract

GraphBin2 is an extension of GraphBin which refines the binning results obtained from existing tools and, more importantly, is able to assign contigs to multiple bins. GraphBin2 uses the connectivity and coverage information from assembly graphs to adjust existing binning results on contigs and to infer contigs shared by multiple species.

Original language	English
Publisher	Zenodo
Edition	Version v1.2.1
Media of output	Online
Size	102.3 MB
DOIs	https://doi.org/10.5281/zenodo.8274998
Publication status	Published - 23 Aug 2023

Keywords

metagenomics
binning
Contigs
assembly-graphs
Overlapped binning
software

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10.5281/zenodo.8274998Licence: CC BY

https://github.com/metagentools/GraphBin2Licence: CC BY

Cite this

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title = "metagentools/GraphBin2:: GraphBin2 v1.2.1",

abstract = "GraphBin2 is an extension of GraphBin which refines the binning results obtained from existing tools and, more importantly, is able to assign contigs to multiple bins. GraphBin2 uses the connectivity and coverage information from assembly graphs to adjust existing binning results on contigs and to infer contigs shared by multiple species.",

keywords = "metagenomics, binning, Contigs, assembly-graphs, Overlapped binning, software",

author = "Vijini Mallawaarachchi",

year = "2023",

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AB - GraphBin2 is an extension of GraphBin which refines the binning results obtained from existing tools and, more importantly, is able to assign contigs to multiple bins. GraphBin2 uses the connectivity and coverage information from assembly graphs to adjust existing binning results on contigs and to infer contigs shared by multiple species.

KW - metagenomics

KW - binning

KW - Contigs

KW - assembly-graphs

KW - Overlapped binning

KW - software

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DO - 10.5281/zenodo.8274998

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metagentools/GraphBin2: GraphBin2 v1.2.1

Abstract

Keywords

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Cite this