Modelling the runtime of the gaussian computational chemistry application and assessing the impacts of microarchitectural variations

Joseph Antony, Alistair P. Rendell, Rui Yang, Gary Trucks, Michael J. Frisch

Research output: Contribution to journalConference articlepeer-review

4 Citations (Scopus)

Abstract

This paper explores the use of a simple linear performance model, that determines execution time based instruction and cache miss counts, for describing the behaviour of two-electron integral evaluation algorithm in the Gaussian computational chemistry package. Four different microarchitecture platforms are considered with a total of seven individual microprocessors. Both Hartree-Fock and hybrid Hartree-Fock/Density Functional Theory electronic structure methods are assessed. In most cases the model is found to be accurate to within 3%. Least agreement is for an Athlon64 system (ranging from 1.8% to 6.5%) and a periodic boundary computation on an Opteron where errors of up to 6.8% are observed. These errors arise as the model does not account for the intricacies of out-of-order execution, on-chip write-back buffers and prefetch techniques that modern microprocessors implement. The parameters from the linear performance model are combined with instruction and cache miss counts obtained from functional cache simulation to predict the effect of cache modification on total execution time. Variations in level 1 and 2 linesize and level 2 total size are considered, we find there is some benefit if linesizes are increased (L1: 8%, L2: 4%). Increasing the level 2 cache size is also predicted to be beneficial, although the cache blocking approach already implemented in the Gaussian integral evaluation code was found to be working well.

Original languageEnglish
Pages (from-to)281-291
Number of pages11
JournalProcedia Computer Science
Volume4
DOIs
Publication statusPublished - 15 Jun 2011
Externally publishedYes
Event11th International Conference on Computational Science, ICCS 2011 - Singapore, Singapore
Duration: 1 Jun 20113 Jun 2011

Bibliographical note

'© 2011 Published by Elsevier Ltd...Open access under CC BY-NC-ND license.'

Keywords

  • B3LYP
  • Cache simulation
  • ERI
  • Gaussian
  • Hardware performance counters
  • HF
  • LPM
  • Performance model
  • PRISM

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