Modulation of immune responses to vaccination by the microbiota: implications and potential mechanisms

David J. Lynn, Saoirse C. Benson, Miriam A. Lynn, Bali Pulendran

Research output: Contribution to journalReview articlepeer-review

115 Citations (Scopus)


The need for highly effective vaccines that induce robust and long-lasting immunity has never been more apparent. However, for reasons that are still poorly understood, immune responses to vaccination are highly variable between different individuals and different populations. Furthermore, vaccine immunogenicity is frequently suboptimal in the very populations who are at most risk from infectious disease, including infants, the elderly, and those living in low-income and middle-income countries. Although many factors have the potential to influence vaccine immunogenicity and therefore vaccine effectiveness, increasing evidence from clinical studies and animal models now suggests that the composition and function of the gut microbiota are crucial factors modulating immune responses to vaccination. In this Review, we synthesize this evidence, discuss the immunological mechanisms that potentially mediate these effects and consider the potential of microbiota-targeted interventions to optimize vaccine effectiveness.

Original languageEnglish
Pages (from-to)33-46
Number of pages14
Issue number1
Early online date17 May 2021
Publication statusPublished - Jan 2022


  • Immunization
  • Microbiome
  • Vaccines


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