Protein Interaction Data Curation - The International Molecular Exchange (IMEx) Consortium

Sandra Orchard; Samuel Kerrien; Sara Abbani; Bruno Aranda; Jignesh Bhate; Shelby Bidwell; Alan Bridge; Leonardo Briganti; Fiona Brinkman; Gianni Cesareni; Andrew Chatr-aryamontri; Emilie Chautard; Carol Chen; Marine Dumousseau; Johannes Goll; Robert Hancock; Linda Hannick; Igor Jurisica; Jyoti Khadake; David Lynn; Usha Mahadevan; Livia Perfetto; Arathi Raghunath; Sylvie Ricard-Blum; Bernd Roechert; Lukasz Salwinski; Volker Stümpflen; Mike Tyers; Peter Uetz; Ioannis Xenarios; Henning Hermjakob

doi:10.1038/nmeth.1931

Protein Interaction Data Curation - The International Molecular Exchange (IMEx) Consortium

Sandra Orchard, Samuel Kerrien, Sara Abbani, Bruno Aranda, Jignesh Bhate, Shelby Bidwell, Alan Bridge, Leonardo Briganti, Fiona Brinkman, Gianni Cesareni, Andrew Chatr-aryamontri, Emilie Chautard, Carol Chen, Marine Dumousseau, Johannes Goll, Robert Hancock, Linda Hannick, Igor Jurisica, Jyoti Khadake, David LynnUsha Mahadevan, Livia Perfetto, Arathi Raghunath, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwinski, Volker Stümpflen, Mike Tyers, Peter Uetz, Ioannis Xenarios, Henning Hermjakob

Research output: Contribution to journal › Review article › peer-review

414 Citations (Scopus)

Abstract

The International Molecular Exchange (IMEx) consortium is an international collaboration between major public interaction data providers to share literature-curation efforts and make a nonredundant set of protein interactions available in a single search interface on a common website (http://www. imexconsortium.org/). Common curation rules have been developed, and a central registry is used to manage the selection of articles to enter into the dataset. We discuss the advantages of such a service to the user, our quality-control measures and our data-distribution practices.

Original language	English
Pages (from-to)	345-350
Number of pages	6
Journal	NATURE METHODS
Volume	9
Issue number	4
DOIs	https://doi.org/10.1038/nmeth.1931
Publication status	Published - Apr 2012

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Orchard, S., Kerrien, S., Abbani, S., Aranda, B., Bhate, J., Bidwell, S., Bridge, A., Briganti, L., Brinkman, F., Cesareni, G., Chatr-aryamontri, A., Chautard, E., Chen, C., Dumousseau, M., Goll, J., Hancock, R., Hannick, L., Jurisica, I., Khadake, J., ... Hermjakob, H. (2012). Protein Interaction Data Curation - The International Molecular Exchange (IMEx) Consortium. NATURE METHODS, 9(4), 345-350. https://doi.org/10.1038/nmeth.1931

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title = "Protein Interaction Data Curation - The International Molecular Exchange (IMEx) Consortium",

abstract = "The International Molecular Exchange (IMEx) consortium is an international collaboration between major public interaction data providers to share literature-curation efforts and make a nonredundant set of protein interactions available in a single search interface on a common website (http://www. imexconsortium.org/). Common curation rules have been developed, and a central registry is used to manage the selection of articles to enter into the dataset. We discuss the advantages of such a service to the user, our quality-control measures and our data-distribution practices.",

author = "Sandra Orchard and Samuel Kerrien and Sara Abbani and Bruno Aranda and Jignesh Bhate and Shelby Bidwell and Alan Bridge and Leonardo Briganti and Fiona Brinkman and Gianni Cesareni and Andrew Chatr-aryamontri and Emilie Chautard and Carol Chen and Marine Dumousseau and Johannes Goll and Robert Hancock and Linda Hannick and Igor Jurisica and Jyoti Khadake and David Lynn and Usha Mahadevan and Livia Perfetto and Arathi Raghunath and Sylvie Ricard-Blum and Bernd Roechert and Lukasz Salwinski and Volker St{\"u}mpflen and Mike Tyers and Peter Uetz and Ioannis Xenarios and Henning Hermjakob",

year = "2012",

month = apr,

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Orchard, S, Kerrien, S, Abbani, S, Aranda, B, Bhate, J, Bidwell, S, Bridge, A, Briganti, L, Brinkman, F, Cesareni, G, Chatr-aryamontri, A, Chautard, E, Chen, C, Dumousseau, M, Goll, J, Hancock, R, Hannick, L, Jurisica, I, Khadake, J, Lynn, D, Mahadevan, U, Perfetto, L, Raghunath, A, Ricard-Blum, S, Roechert, B, Salwinski, L, Stümpflen, V, Tyers, M, Uetz, P, Xenarios, I & Hermjakob, H 2012, 'Protein Interaction Data Curation - The International Molecular Exchange (IMEx) Consortium', NATURE METHODS, vol. 9, no. 4, pp. 345-350. https://doi.org/10.1038/nmeth.1931

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T1 - Protein Interaction Data Curation - The International Molecular Exchange (IMEx) Consortium

AU - Orchard, Sandra

AU - Kerrien, Samuel

AU - Abbani, Sara

AU - Aranda, Bruno

AU - Bhate, Jignesh

AU - Bidwell, Shelby

AU - Bridge, Alan

AU - Briganti, Leonardo

AU - Brinkman, Fiona

AU - Cesareni, Gianni

AU - Chatr-aryamontri, Andrew

AU - Chautard, Emilie

AU - Chen, Carol

AU - Dumousseau, Marine

AU - Goll, Johannes

AU - Hancock, Robert

AU - Hannick, Linda

AU - Jurisica, Igor

AU - Khadake, Jyoti

AU - Lynn, David

AU - Mahadevan, Usha

AU - Perfetto, Livia

AU - Raghunath, Arathi

AU - Ricard-Blum, Sylvie

AU - Roechert, Bernd

AU - Salwinski, Lukasz

AU - Stümpflen, Volker

AU - Tyers, Mike

AU - Uetz, Peter

AU - Xenarios, Ioannis

AU - Hermjakob, Henning

PY - 2012/4

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N2 - The International Molecular Exchange (IMEx) consortium is an international collaboration between major public interaction data providers to share literature-curation efforts and make a nonredundant set of protein interactions available in a single search interface on a common website (http://www. imexconsortium.org/). Common curation rules have been developed, and a central registry is used to manage the selection of articles to enter into the dataset. We discuss the advantages of such a service to the user, our quality-control measures and our data-distribution practices.

AB - The International Molecular Exchange (IMEx) consortium is an international collaboration between major public interaction data providers to share literature-curation efforts and make a nonredundant set of protein interactions available in a single search interface on a common website (http://www. imexconsortium.org/). Common curation rules have been developed, and a central registry is used to manage the selection of articles to enter into the dataset. We discuss the advantages of such a service to the user, our quality-control measures and our data-distribution practices.

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U2 - 10.1038/nmeth.1931

DO - 10.1038/nmeth.1931

M3 - Review article

SN - 1548-7091

VL - 9

SP - 345

EP - 350

JO - NATURE METHODS

JF - NATURE METHODS

IS - 4

ER -

Protein Interaction Data Curation - The International Molecular Exchange (IMEx) Consortium

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