Quality control and preprocessing of metagenomic datasets

Robert Schmieder; Robert Edwards

doi:10.1093/bioinformatics/btr026

Quality control and preprocessing of metagenomic datasets

Robert Schmieder, Robert Edwards

Research output: Contribution to journal › Article › peer-review

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Abstract

Summary: Here, we present PRINSEQ for easy and rapid quality control and data preprocessing of genomic and metagenomic datasets. Summary statistics of FASTA (and QUAL) or FASTQ files are generated in tabular and graphical form and sequences can be filtered, reformatted and trimmed by a variety of options to improve downstream analysis.

Original language	English
Article number	btr026
Pages (from-to)	863-864
Number of pages	2
Journal	Bioinformatics
Volume	27
Issue number	6
DOIs	https://doi.org/10.1093/bioinformatics/btr026
Publication status	Published - 15 Mar 2011
Externally published	Yes

Bibliographical note

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/
by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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10.1093/bioinformatics/btr026Licence: CC BY-NC

Schmieder_Quality_2011Final published version, 103 KBLicence: CC BY-NC

Cite this

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Quality control and preprocessing of metagenomic datasets

Abstract

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