TY - JOUR
T1 - Role of pulling direction in understanding the energy landscape of proteins
AU - Rajesh, R.
AU - Giri, D.
AU - Jensen, I.
AU - Kumar, S.
PY - 2008/8/13
Y1 - 2008/8/13
N2 - Single-molecule force spectroscopy provide details of the underlying energy surfaces of proteins which are essential to the understanding of their unfolding process. Recently, it has been observed experimentally that by pulling proteins in different directions relative to their secondary structure, one can gain a better understanding of the shape of the energy landscape. We consider simple lattice models which are anisotropic in nature to study the response of a force in unfolding of a polymer. Our analytical solution of the model, supported by extensive numerical calculations, reveal that the force temperature diagrams are very different depending on the direction of the applied force. We find that either unzipping or shearing kind transitions dominate the dynamics of the unfolding process depending solely on the direction of the applied force.
AB - Single-molecule force spectroscopy provide details of the underlying energy surfaces of proteins which are essential to the understanding of their unfolding process. Recently, it has been observed experimentally that by pulling proteins in different directions relative to their secondary structure, one can gain a better understanding of the shape of the energy landscape. We consider simple lattice models which are anisotropic in nature to study the response of a force in unfolding of a polymer. Our analytical solution of the model, supported by extensive numerical calculations, reveal that the force temperature diagrams are very different depending on the direction of the applied force. We find that either unzipping or shearing kind transitions dominate the dynamics of the unfolding process depending solely on the direction of the applied force.
UR - http://www.scopus.com/inward/record.url?scp=50049113547&partnerID=8YFLogxK
U2 - 10.1103/PhysRevE.78.021905
DO - 10.1103/PhysRevE.78.021905
M3 - Article
AN - SCOPUS:50049113547
SN - 1539-3755
VL - 78
JO - Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
JF - Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
IS - 2
M1 - 021905
ER -