Vini2/phables:: phables 1.2.0

Vijini Mallawaarachchi; Michael Roach

doi:10.5281/zenodo.8229114

Vini2/phables: phables 1.2.0

Vijini Mallawaarachchi (Developer), Michael Roach (Developer)

College of Science and Engineering

Research output: Non-textual form › Software

Abstract

Phables is a tool developed to resolve bacteriophage genomes using phage bubbles in viral metagenomic data. It models cyclic phage-like components in the viral metagenomic assembly as flow networks, models as a minimum flow decomposition problem and resolves genomic paths corresponding to flow paths determined. Phables uses the Minimum Flow Decomposition via Integer Linear Programming implementation to obtain the flow paths.

Original language	English
Publisher	Zenodo
Edition	Version v1.2.0
Media of output	Online
Size	3.3 MB
DOIs	https://doi.org/10.5281/zenodo.8229114
Publication status	Published - 9 Aug 2023

Keywords

bioinformatics
genomics
metagenomics
assembly-graphs
bacteriophages
software

Access to Document

10.5281/zenodo.8229114Licence: CC BY

https://github.com/Vini2/phablesLicence: In Copyright

Cite this

@misc{176bb079ea0d4a249e8a034860d7c949,

title = "Vini2/phables:: phables 1.2.0 ",

abstract = "Phables is a tool developed to resolve bacteriophage genomes using phage bubbles in viral metagenomic data. It models cyclic phage-like components in the viral metagenomic assembly as flow networks, models as a minimum flow decomposition problem and resolves genomic paths corresponding to flow paths determined. Phables uses the Minimum Flow Decomposition via Integer Linear Programming implementation to obtain the flow paths.",

keywords = "bioinformatics, genomics, metagenomics, assembly-graphs, bacteriophages, software",

author = "Vijini Mallawaarachchi and Michael Roach",

year = "2023",

month = aug,

day = "9",

doi = "10.5281/zenodo.8229114",

language = "English",

publisher = "Zenodo",

edition = "Version v1.2.0",

}

TY - ADVS

T1 - Vini2/phables:

T2 - phables 1.2.0

A2 - Mallawaarachchi, Vijini

A2 - Roach, Michael

PY - 2023/8/9

Y1 - 2023/8/9

N2 - Phables is a tool developed to resolve bacteriophage genomes using phage bubbles in viral metagenomic data. It models cyclic phage-like components in the viral metagenomic assembly as flow networks, models as a minimum flow decomposition problem and resolves genomic paths corresponding to flow paths determined. Phables uses the Minimum Flow Decomposition via Integer Linear Programming implementation to obtain the flow paths.

AB - Phables is a tool developed to resolve bacteriophage genomes using phage bubbles in viral metagenomic data. It models cyclic phage-like components in the viral metagenomic assembly as flow networks, models as a minimum flow decomposition problem and resolves genomic paths corresponding to flow paths determined. Phables uses the Minimum Flow Decomposition via Integer Linear Programming implementation to obtain the flow paths.

KW - bioinformatics

KW - genomics

KW - metagenomics

KW - assembly-graphs

KW - bacteriophages

KW - software

U2 - 10.5281/zenodo.8229114

DO - 10.5281/zenodo.8229114

M3 - Software

PB - Zenodo

ER -

Vini2/phables: phables 1.2.0

Abstract

Keywords

Access to Document

Fingerprint

Cite this